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pure-gcc + Eclipse CDT autodiscovery / scanner discovery

Has anyone been able to get Eclipse working with the pure-gcc makefiles and autodiscovery of include files?

I can get Eclipse to build my project using the pure-gcc makefiles, but what I cannot get to work is the scanner discovery / indexing whereby Eclipse automatically finds include files. If I specify include paths in Eclipse manually, this works, but this is not efficient as we already have the includes mapped out in the makefiles.

The may seem trivial and I know it has been dismissed in many older threads I've found in this forum, but this is a major issue for trying to maintain a large project and use Eclipse as the development tool using makefiles.

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