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Using SES for debug w/ mcuboot

If I build/flash from the command line with "west build -b nrf9160_pca10090ns" and "west flash -d build" it loads a fully combined image with mcuboot and (spm+application) in the first mcu slot.

If I build/flash from SES it appears to build everything but then the when mcuboot starts immediately reports that the primary slot is not valid, which makes me think that (spm+application) are not being flashed.

Is there any guidance on how to use Segger Embedded Studio to program and debug an application wrapped up in mcuboot?

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