Capture a Timer Compare Register during the interrupt of another

Question

I am working with the nRF52840 DK and was looking for a way to set a compare register to trigger at 300 ticks, and another to trigger at 40000 ticks. The register that triggers at 300 ticks should trigger an interrupt where I want to grab the current value of the 40000 tick register. In my implementation, I am triggering the interrupt with CC[0] and was hoping to capture the ticks of CC[1], however I believe I am doing this incorrectly as the timer seems to reset when I reach the interrupt and capture CC[1] so I get the same value every time. Is the timer resetting its count every time it reaches the interrupt, and if so would I need to implement a separate timer to achieve my goal?

#define FREE_TIMER            NRF_TIMER4
#define FREE_TIMER_IRQn       TIMER4_IRQn
#define FREE_TIMER_IRQHandler TIMER4_IRQHandler

static void freeTimerInit(void)
{
    FREE_TIMER->TASKS_STOP  = 1;                                                        // Stop the timer
    FREE_TIMER->TASKS_CLEAR = 1;                                                        // Clear the timer
    FREE_TIMER->BITMODE     = TIMER_BITMODE_BITMODE_32Bit << TIMER_BITMODE_BITMODE_Pos; // Ensure the timer uses 32-bit bitmode or higher
    FREE_TIMER->PRESCALER   = 0;                                                        // Set the prescaler to 0, for a timer interval of 0.06 us (16M / 2^0)
    FREE_TIMER->CC[0]       = 300;                                                      // Set the CC[0] register to hit every 18 us (to check sample skip status)
    FREE_TIMER->CC[1]       = 40000;
    FREE_TIMER->SHORTS      = TIMER_SHORTS_COMPARE0_CLEAR_Msk;                          // Make sure the timer clears after reaching CC[0]
    FREE_TIMER->INTENSET    = TIMER_INTENSET_COMPARE0_Msk;                              // Trigger the interrupt when reaching CC[0]
    NVIC_SetPriority(FREE_TIMER_IRQn, 7);                                               // Set a low IRQ priority and enable interrupts for the timer module
    NVIC_EnableIRQ(FREE_TIMER_IRQn);
    FREE_TIMER->TASKS_START = 1;                                                        // Start the timer
}

uint32_t freeGetTicks(uint8_t chn)
{
    FREE_TIMER->TASKS_CAPTURE[chn] = 1;
    return FREE_TIMER->CC[chn];
}

void FREE_TIMER_IRQHandler(void)
{
    sync_ticks = ts_timestamp_get_ticks_u32(7);
    free_ticks = freeGetTicks(1);
    
    if (FREE_TIMER->EVENTS_COMPARE[0]) {
        FREE_TIMER->EVENTS_COMPARE[0] = 0;
    }
}