I am using NCS-Zephyr, Zephyr version 2.3.0-rc1. If you need to know the NCS version too, please can you include how I can find this?
When I do west flash normally (which uses the nrfjprog runner), it properly flashes my device with the correct merged_nrf52dk_nrf52832.hex. When I use the J-link runner, by doing west -v flash --erase --runner jlink it flashes zephyr.bin and does not boot properly or even run my code. It needs to flash the merged hex like nrfjprog. Do you know how I can fix this?
I asked in the Zephyr slack and one of the developers of West said that NCS is overriding the flash file and causing it to flex the zephyr.bin instead.