CLI interface for controlling dongle using Raspberry Pi

We need to programatically (on the Raspberry Pi using Python) send and receive characters to and from a smartphone using a custom service over BTLE. I have used the blinky example as a start to ensure working telemetry and then added code from the nrf10059 example to add the CLI function. I can get the CLI to work over the debug console but cannot get it to work over USB serial using a terminal emulator (PuTTY). A USB serial port never enumerates. Code attached. Is this even the right approach for the objective? thank you. Note that on the dongle the debug interface using the TagConnect cable doesn't work with either a J-link mini or a PCA10056 DK, you must solder a connector to location P1. This could be because the reset signal is not wired to the TagConnect interface? Please comment.

/**
 * Copyright (c) 2015 - 2019, Nordic Semiconductor ASA
 *
 * All rights reserved.
 *
 * Redistribution and use in source and binary forms, with or without modification,
 * are permitted provided that the following conditions are met:
 *
 * 1. Redistributions of source code must retain the above copyright notice, this
 *    list of conditions and the following disclaimer.
 *
 * 2. Redistributions in binary form, except as embedded into a Nordic
 *    Semiconductor ASA integrated circuit in a product or a software update for
 *    such product, must reproduce the above copyright notice, this list of
 *    conditions and the following disclaimer in the documentation and/or other
 *    materials provided with the distribution.
 *
 * 3. Neither the name of Nordic Semiconductor ASA nor the names of its
 *    contributors may be used to endorse or promote products derived from this
 *    software without specific prior written permission.
 *
 * 4. This software, with or without modification, must only be used with a
 *    Nordic Semiconductor ASA integrated circuit.
 *
 * 5. Any software provided in binary form under this license must not be reverse
 *    engineered, decompiled, modified and/or disassembled.
 *
 * THIS SOFTWARE IS PROVIDED BY NORDIC SEMICONDUCTOR ASA "AS IS" AND ANY EXPRESS
 * OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES
 * OF MERCHANTABILITY, NONINFRINGEMENT, AND FITNESS FOR A PARTICULAR PURPOSE ARE
 * DISCLAIMED. IN NO EVENT SHALL NORDIC SEMICONDUCTOR ASA OR CONTRIBUTORS BE
 * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
 * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE
 * GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION)
 * HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
 * LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT
 * OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
 *
 */
/**
 * @brief Blinky Sample Application main file.
 *
 * This file contains the source code for a sample server application using the LED Button service.
 */

#include <stdint.h>
#include <string.h>
#include "nordic_common.h"
#include "nrf.h"
#include "app_error.h"
#include "ble.h"
#include "ble_err.h"
#include "ble_hci.h"
#include "ble_srv_common.h"
#include "ble_advdata.h"
#include "ble_conn_params.h"
#include "nrf_sdh.h"
#include "nrf_sdh_ble.h"
#include "boards.h"
#include "app_timer.h"
#include "app_button.h"
#include "ble_lbs.h"
#include "nrf_ble_gatt.h"
#include "nrf_ble_qwr.h"
#include "nrf_pwr_mgmt.h"

#include "nrf_log.h"
#include "nrf_log_ctrl.h"
#include "nrf_log_default_backends.h"

//apdobaj includes for CLI
#include <stdio.h>
#include <stdbool.h>
#include <stddef.h>

#include "nrf_drv_clock.h"
#include "nrf_gpio.h"
#include "nrf_delay.h"

#include "fds.h"
#include "app_util.h"

#include "nrf_cli.h"
#include "nrf_cli_rtt.h"
#include "nrf_cli_types.h"

#include "nrf_log_backend_flash.h"
#include "nrf_fstorage_nvmc.h"

#include "nrf_mpu_lib.h"
#include "nrf_stack_guard.h"
//end includes for CLI


#define ADVERTISING_LED                 BSP_BOARD_LED_0                         /**< Is on when device is advertising. */
#define CONNECTED_LED                   BSP_BOARD_LED_1                         /**< Is on when device has connected. */
#define LEDBUTTON_LED                   BSP_BOARD_LED_2                         /**< LED to be toggled with the help of the LED Button Service. */
#define LEDBUTTON_BUTTON                BSP_BUTTON_0                            /**< Button that will trigger the notification event with the LED Button Service */

#define DEVICE_NAME                     "AST_RHDM"                              /**< Name of device. Will be included in the advertising data. */

#define APP_BLE_OBSERVER_PRIO           3                                       /**< Application's BLE observer priority. You shouldn't need to modify this value. */
#define APP_BLE_CONN_CFG_TAG            1                                       /**< A tag identifying the SoftDevice BLE configuration. */

#define APP_ADV_INTERVAL                64                                      /**< The advertising interval (in units of 0.625 ms; this value corresponds to 40 ms). */
#define APP_ADV_DURATION                BLE_GAP_ADV_TIMEOUT_GENERAL_UNLIMITED   /**< The advertising time-out (in units of seconds). When set to 0, we will never time out. */


#define MIN_CONN_INTERVAL               MSEC_TO_UNITS(100, UNIT_1_25_MS)        /**< Minimum acceptable connection interval (0.5 seconds). */
#define MAX_CONN_INTERVAL               MSEC_TO_UNITS(200, UNIT_1_25_MS)        /**< Maximum acceptable connection interval (1 second). */
#define SLAVE_LATENCY                   0                                       /**< Slave latency. */
#define CONN_SUP_TIMEOUT                MSEC_TO_UNITS(4000, UNIT_10_MS)         /**< Connection supervisory time-out (4 seconds). */

#define FIRST_CONN_PARAMS_UPDATE_DELAY  APP_TIMER_TICKS(20000)                  /**< Time from initiating event (connect or start of notification) to first time sd_ble_gap_conn_param_update is called (15 seconds). */
#define NEXT_CONN_PARAMS_UPDATE_DELAY   APP_TIMER_TICKS(5000)                   /**< Time between each call to sd_ble_gap_conn_param_update after the first call (5 seconds). */
#define MAX_CONN_PARAMS_UPDATE_COUNT    3                                       /**< Number of attempts before giving up the connection parameter negotiation. */

#define BUTTON_DETECTION_DELAY          APP_TIMER_TICKS(50)                     /**< Delay from a GPIOTE event until a button is reported as pushed (in number of timer ticks). */

#define DEAD_BEEF                       0xDEADBEEF                              /**< Value used as error code on stack dump, can be used to identify stack location on stack unwind. */
//apdobaj turn on CLI
#define USE_CLI                         1
//#define CLI_OVER_USB_CDC_ACM            1
//apdobaj end turn on CLI

BLE_LBS_DEF(m_lbs);                                                             /**< LED Button Service instance. */
NRF_BLE_GATT_DEF(m_gatt);                                                       /**< GATT module instance. */
NRF_BLE_QWR_DEF(m_qwr);                                                         /**< Context for the Queued Write module.*/

static uint16_t m_conn_handle = BLE_CONN_HANDLE_INVALID;                        /**< Handle of the current connection. */

static uint8_t m_adv_handle = BLE_GAP_ADV_SET_HANDLE_NOT_SET;                   /**< Advertising handle used to identify an advertising set. */
static uint8_t m_enc_advdata[BLE_GAP_ADV_SET_DATA_SIZE_MAX];                    /**< Buffer for storing an encoded advertising set. */
static uint8_t m_enc_scan_response_data[BLE_GAP_ADV_SET_DATA_SIZE_MAX];         /**< Buffer for storing an encoded scan data. */

/**@brief Struct that contains pointers to the encoded advertising data. */
static ble_gap_adv_data_t m_adv_data =
{
    .adv_data =
    {
        .p_data = m_enc_advdata,
        .len    = BLE_GAP_ADV_SET_DATA_SIZE_MAX
    },
    .scan_rsp_data =
    {
        .p_data = m_enc_scan_response_data,
        .len    = BLE_GAP_ADV_SET_DATA_SIZE_MAX

    }
};

//apdobaj defines for CLI
#if USE_CLI
#if defined(APP_USBD_ENABLED) && APP_USBD_ENABLED
#define CLI_OVER_USB_CDC_ACM 1
#else
#define CLI_OVER_USB_CDC_ACM 0
#endif

#if CLI_OVER_USB_CDC_ACM
#include "nrf_cli_cdc_acm.h"
#include "nrf_drv_usbd.h"
#include "app_usbd_core.h"
#include "app_usbd.h"
#include "app_usbd_string_desc.h"
#include "app_usbd_cdc_acm.h"
#endif //CLI_OVER_USB_CDC_ACM

#if defined(TX_PIN_NUMBER) && defined(RX_PIN_NUMBER)
#define CLI_OVER_UART 1
#else
#define CLI_OVER_UART 0
#endif

#if CLI_OVER_UART
#include "nrf_cli_uart.h"
#endif

/* If enabled then CYCCNT (high resolution) timestamp is used for the logger. */
#define USE_CYCCNT_TIMESTAMP_FOR_LOG 0

/**@file
 * @defgroup CLI_example main.c
 *
 * @{
 *
 */

#if NRF_LOG_BACKEND_FLASHLOG_ENABLED
NRF_LOG_BACKEND_FLASHLOG_DEF(m_flash_log_backend);
#endif

#if NRF_LOG_BACKEND_CRASHLOG_ENABLED
NRF_LOG_BACKEND_CRASHLOG_DEF(m_crash_log_backend);
#endif

/* Counter timer. */
APP_TIMER_DEF(m_timer_0);

/* Declared in demo_cli.c */
extern uint32_t m_counter;
extern bool m_counter_active;

#if CLI_OVER_USB_CDC_ACM

/**
 * @brief Enable power USB detection
 *
 * Configure if example supports USB port connection
 */
#ifndef USBD_POWER_DETECTION
#define USBD_POWER_DETECTION false
#endif

static void usbd_user_ev_handler(app_usbd_event_type_t event)
{
    switch (event)
    {
        case APP_USBD_EVT_STOPPED:
            app_usbd_disable();
            break;
        case APP_USBD_EVT_POWER_DETECTED:
            if (!nrf_drv_usbd_is_enabled())
            {
                app_usbd_enable();
            }
            break;
        case APP_USBD_EVT_POWER_REMOVED:
            app_usbd_stop();
            break;
        case APP_USBD_EVT_POWER_READY:
            app_usbd_start();
            break;
        default:
            break;
    }
}

#endif //CLI_OVER_USB_CDC_ACM

/**
 * @brief Command line interface instance
 * */
#define CLI_EXAMPLE_LOG_QUEUE_SIZE  (4)

#if CLI_OVER_USB_CDC_ACM
NRF_CLI_CDC_ACM_DEF(m_cli_cdc_acm_transport);
NRF_CLI_DEF(m_cli_cdc_acm,
            "usb_cli:~$ ",
            &m_cli_cdc_acm_transport.transport,
            '\r',
            CLI_EXAMPLE_LOG_QUEUE_SIZE);
#endif //CLI_OVER_USB_CDC_ACM

#if CLI_OVER_UART
NRF_CLI_UART_DEF(m_cli_uart_transport, 0, 64, 16);
NRF_CLI_DEF(m_cli_uart,
            "uart_cli:~$ ",
            &m_cli_uart_transport.transport,
            '\r',
            CLI_EXAMPLE_LOG_QUEUE_SIZE);
#endif

//apdobaj comment the following two DEF's

NRF_CLI_RTT_DEF(m_cli_rtt_transport);
NRF_CLI_DEF(m_cli_rtt,
            "rtt_cli:~$ ",
            &m_cli_rtt_transport.transport,
            '\n',
            CLI_EXAMPLE_LOG_QUEUE_SIZE);


static void timer_handle(void * p_context)
{
    UNUSED_PARAMETER(p_context);

    if (m_counter_active)
    {
        m_counter++;
        NRF_LOG_RAW_INFO("counter = %d\n", m_counter);
    }
}

static void cli_start(void)
{
    ret_code_t ret;

#if CLI_OVER_USB_CDC_ACM
    ret = nrf_cli_start(&m_cli_cdc_acm);
    APP_ERROR_CHECK(ret);
#endif

#if CLI_OVER_UART
    ret = nrf_cli_start(&m_cli_uart);
    APP_ERROR_CHECK(ret);
#endif

//apdobaj comment the rtt start
    ret = nrf_cli_start(&m_cli_rtt);
    APP_ERROR_CHECK(ret);
}

static void cli_init(void)
{
    ret_code_t ret;

#if CLI_OVER_USB_CDC_ACM
    ret = nrf_cli_init(&m_cli_cdc_acm, NULL, true, true, NRF_LOG_SEVERITY_INFO);
    APP_ERROR_CHECK(ret);
#endif

#if CLI_OVER_UART
    nrf_drv_uart_config_t uart_config = NRF_DRV_UART_DEFAULT_CONFIG;
    uart_config.pseltxd = TX_PIN_NUMBER;
    uart_config.pselrxd = RX_PIN_NUMBER;
    uart_config.hwfc    = NRF_UART_HWFC_DISABLED;
    ret = nrf_cli_init(&m_cli_uart, &uart_config, true, true, NRF_LOG_SEVERITY_INFO);
    APP_ERROR_CHECK(ret);
#endif

//apdobaj comment the rtt start
    ret = nrf_cli_init(&m_cli_rtt, NULL, true, true, NRF_LOG_SEVERITY_INFO);
    APP_ERROR_CHECK(ret);
}


static void usbd_init(void)
{
#if CLI_OVER_USB_CDC_ACM
    ret_code_t ret;
    static const app_usbd_config_t usbd_config = {
        .ev_handler = app_usbd_event_execute,
        .ev_state_proc = usbd_user_ev_handler
    };
    ret = app_usbd_init(&usbd_config);
    APP_ERROR_CHECK(ret);

    app_usbd_class_inst_t const * class_cdc_acm =
            app_usbd_cdc_acm_class_inst_get(&nrf_cli_cdc_acm);
    ret = app_usbd_class_append(class_cdc_acm);
    APP_ERROR_CHECK(ret);

    if (USBD_POWER_DETECTION)
    {
        ret = app_usbd_power_events_enable();
        APP_ERROR_CHECK(ret);
    }
    else
    {
        NRF_LOG_INFO("No USB power detection enabled\nStarting USB now");

        app_usbd_enable();
        app_usbd_start();
    }

    /* Give some time for the host to enumerate and connect to the USB CDC port */
    nrf_delay_ms(1000);
#endif
}


static void cli_process(void)
{
#if CLI_OVER_USB_CDC_ACM
    nrf_cli_process(&m_cli_cdc_acm);
#endif

#if CLI_OVER_UART
    nrf_cli_process(&m_cli_uart);
#endif

//apdobaj comment the rtt cli
    nrf_cli_process(&m_cli_rtt);
}


static void flashlog_init(void)
{
    ret_code_t ret;
    int32_t backend_id;

    ret = nrf_log_backend_flash_init(&nrf_fstorage_nvmc);
    APP_ERROR_CHECK(ret);
#if NRF_LOG_BACKEND_FLASHLOG_ENABLED
    backend_id = nrf_log_backend_add(&m_flash_log_backend, NRF_LOG_SEVERITY_WARNING);
    APP_ERROR_CHECK_BOOL(backend_id >= 0);

    nrf_log_backend_enable(&m_flash_log_backend);
#endif

#if NRF_LOG_BACKEND_CRASHLOG_ENABLED
    backend_id = nrf_log_backend_add(&m_crash_log_backend, NRF_LOG_SEVERITY_INFO);
    APP_ERROR_CHECK_BOOL(backend_id >= 0);

    nrf_log_backend_enable(&m_crash_log_backend);
#endif
}

static inline void stack_guard_init(void)
{
    APP_ERROR_CHECK(nrf_mpu_lib_init());
    APP_ERROR_CHECK(nrf_stack_guard_init());
}

uint32_t cyccnt_get(void)
{
    return DWT->CYCCNT;
}

//end defines for CLI
#endif


/**@brief Function for assert macro callback.
 *
 * @details This function will be called in case of an assert in the SoftDevice.
 *
 * @warning This handler is an example only and does not fit a final product. You need to analyze
 *          how your product is supposed to react in case of Assert.
 * @warning On assert from the SoftDevice, the system can only recover on reset.
 *
 * @param[in] line_num    Line number of the failing ASSERT call.
 * @param[in] p_file_name File name of the failing ASSERT call.
 */
void assert_nrf_callback(uint16_t line_num, const uint8_t * p_file_name)
{
    app_error_handler(DEAD_BEEF, line_num, p_file_name);
}


/**@brief Function for the LEDs initialization.
 *
 * @details Initializes all LEDs used by the application.
 */
static void leds_init(void)
{
    bsp_board_init(BSP_INIT_LEDS);
}


/**@brief Function for the Timer initialization.
 *
 * @details Initializes the timer module.
 */
static void timers_init(void)
{
    // Initialize timer module, making it use the scheduler
    ret_code_t err_code = app_timer_init();
    APP_ERROR_CHECK(err_code);
}


/**@brief Function for the GAP initialization.
 *
 * @details This function sets up all the necessary GAP (Generic Access Profile) parameters of the
 *          device including the device name, appearance, and the preferred connection parameters.
 */
static void gap_params_init(void)
{
    ret_code_t              err_code;
    ble_gap_conn_params_t   gap_conn_params;
    ble_gap_conn_sec_mode_t sec_mode;

    BLE_GAP_CONN_SEC_MODE_SET_OPEN(&sec_mode);

    err_code = sd_ble_gap_device_name_set(&sec_mode,
                                          (const uint8_t *)DEVICE_NAME,
                                          strlen(DEVICE_NAME));
    APP_ERROR_CHECK(err_code);

    memset(&gap_conn_params, 0, sizeof(gap_conn_params));

    gap_conn_params.min_conn_interval = MIN_CONN_INTERVAL;
    gap_conn_params.max_conn_interval = MAX_CONN_INTERVAL;
    gap_conn_params.slave_latency     = SLAVE_LATENCY;
    gap_conn_params.conn_sup_timeout  = CONN_SUP_TIMEOUT;

    err_code = sd_ble_gap_ppcp_set(&gap_conn_params);
    APP_ERROR_CHECK(err_code);
}


/**@brief Function for initializing the GATT module.
 */
static void gatt_init(void)
{
    ret_code_t err_code = nrf_ble_gatt_init(&m_gatt, NULL);
    APP_ERROR_CHECK(err_code);
}


/**@brief Function for initializing the Advertising functionality.
 *
 * @details Encodes the required advertising data and passes it to the stack.
 *          Also builds a structure to be passed to the stack when starting advertising.
 */
static void advertising_init(void)
{
    ret_code_t    err_code;
    ble_advdata_t advdata;
    ble_advdata_t srdata;

    ble_uuid_t adv_uuids[] = {{LBS_UUID_SERVICE, m_lbs.uuid_type}};

    // Build and set advertising data.
    memset(&advdata, 0, sizeof(advdata));

    advdata.name_type          = BLE_ADVDATA_FULL_NAME;
    advdata.include_appearance = true;
    advdata.flags              = BLE_GAP_ADV_FLAGS_LE_ONLY_GENERAL_DISC_MODE;


    memset(&srdata, 0, sizeof(srdata));
    srdata.uuids_complete.uuid_cnt = sizeof(adv_uuids) / sizeof(adv_uuids[0]);
    srdata.uuids_complete.p_uuids  = adv_uuids;

    err_code = ble_advdata_encode(&advdata, m_adv_data.adv_data.p_data, &m_adv_data.adv_data.len);
    APP_ERROR_CHECK(err_code);

    err_code = ble_advdata_encode(&srdata, m_adv_data.scan_rsp_data.p_data, &m_adv_data.scan_rsp_data.len);
    APP_ERROR_CHECK(err_code);

    ble_gap_adv_params_t adv_params;

    // Set advertising parameters.
    memset(&adv_params, 0, sizeof(adv_params));

    adv_params.primary_phy     = BLE_GAP_PHY_1MBPS;
    adv_params.duration        = APP_ADV_DURATION;
    adv_params.properties.type = BLE_GAP_ADV_TYPE_CONNECTABLE_SCANNABLE_UNDIRECTED;
    adv_params.p_peer_addr     = NULL;
    adv_params.filter_policy   = BLE_GAP_ADV_FP_ANY;
    adv_params.interval        = APP_ADV_INTERVAL;

    err_code = sd_ble_gap_adv_set_configure(&m_adv_handle, &m_adv_data, &adv_params);
    APP_ERROR_CHECK(err_code);
}


/**@brief Function for handling Queued Write Module errors.
 *
 * @details A pointer to this function will be passed to each service which may need to inform the
 *          application about an error.
 *
 * @param[in]   nrf_error   Error code containing information about what went wrong.
 */
static void nrf_qwr_error_handler(uint32_t nrf_error)
{
    APP_ERROR_HANDLER(nrf_error);
}


/**@brief Function for handling write events to the LED characteristic.
 *
 * @param[in] p_lbs     Instance of LED Button Service to which the write applies.
 * @param[in] led_state Written/desired state of the LED.
 */
static void led_write_handler(uint16_t conn_handle, ble_lbs_t * p_lbs, uint8_t led_state)
{
    if (led_state)
    {
        bsp_board_led_on(LEDBUTTON_LED);
        NRF_LOG_INFO("Received LED ON!");
    }
    else
    {
        bsp_board_led_off(LEDBUTTON_LED);
        NRF_LOG_INFO("Received LED OFF!");
    }
}


/**@brief Function for initializing services that will be used by the application.
 */
static void services_init(void)
{
    ret_code_t         err_code;
    ble_lbs_init_t     init     = {0};
    nrf_ble_qwr_init_t qwr_init = {0};

    // Initialize Queued Write Module.
    qwr_init.error_handler = nrf_qwr_error_handler;

    err_code = nrf_ble_qwr_init(&m_qwr, &qwr_init);
    APP_ERROR_CHECK(err_code);

    // Initialize LBS.
    init.led_write_handler = led_write_handler;

    err_code = ble_lbs_init(&m_lbs, &init);
    APP_ERROR_CHECK(err_code);
}


/**@brief Function for handling the Connection Parameters Module.
 *
 * @details This function will be called for all events in the Connection Parameters Module that
 *          are passed to the application.
 *
 * @note All this function does is to disconnect. This could have been done by simply
 *       setting the disconnect_on_fail config parameter, but instead we use the event
 *       handler mechanism to demonstrate its use.
 *
 * @param[in] p_evt  Event received from the Connection Parameters Module.
 */
static void on_conn_params_evt(ble_conn_params_evt_t * p_evt)
{
    ret_code_t err_code;

    if (p_evt->evt_type == BLE_CONN_PARAMS_EVT_FAILED)
    {
        err_code = sd_ble_gap_disconnect(m_conn_handle, BLE_HCI_CONN_INTERVAL_UNACCEPTABLE);
        APP_ERROR_CHECK(err_code);
    }
}


/**@brief Function for handling a Connection Parameters error.
 *
 * @param[in] nrf_error  Error code containing information about what went wrong.
 */
static void conn_params_error_handler(uint32_t nrf_error)
{
    APP_ERROR_HANDLER(nrf_error);
}


/**@brief Function for initializing the Connection Parameters module.
 */
static void conn_params_init(void)
{
    ret_code_t             err_code;
    ble_conn_params_init_t cp_init;

    memset(&cp_init, 0, sizeof(cp_init));

    cp_init.p_conn_params                  = NULL;
    cp_init.first_conn_params_update_delay = FIRST_CONN_PARAMS_UPDATE_DELAY;
    cp_init.next_conn_params_update_delay  = NEXT_CONN_PARAMS_UPDATE_DELAY;
    cp_init.max_conn_params_update_count   = MAX_CONN_PARAMS_UPDATE_COUNT;
    cp_init.start_on_notify_cccd_handle    = BLE_GATT_HANDLE_INVALID;
    cp_init.disconnect_on_fail             = false;
    cp_init.evt_handler                    = on_conn_params_evt;
    cp_init.error_handler                  = conn_params_error_handler;

    err_code = ble_conn_params_init(&cp_init);
    APP_ERROR_CHECK(err_code);
}


/**@brief Function for starting advertising.
 */
static void advertising_start(void)
{
    ret_code_t           err_code;

    err_code = sd_ble_gap_adv_start(m_adv_handle, APP_BLE_CONN_CFG_TAG);
    APP_ERROR_CHECK(err_code);

    bsp_board_led_on(ADVERTISING_LED);
}


/**@brief Function for handling BLE events.
 *
 * @param[in]   p_ble_evt   Bluetooth stack event.
 * @param[in]   p_context   Unused.
 */
static void ble_evt_handler(ble_evt_t const * p_ble_evt, void * p_context)
{
    ret_code_t err_code;

    switch (p_ble_evt->header.evt_id)
    {
        case BLE_GAP_EVT_CONNECTED:
            NRF_LOG_INFO("Connected");
            bsp_board_led_on(CONNECTED_LED);
            bsp_board_led_off(ADVERTISING_LED);
            m_conn_handle = p_ble_evt->evt.gap_evt.conn_handle;
            err_code = nrf_ble_qwr_conn_handle_assign(&m_qwr, m_conn_handle);
            APP_ERROR_CHECK(err_code);
            err_code = app_button_enable();
            APP_ERROR_CHECK(err_code);
            break;

        case BLE_GAP_EVT_DISCONNECTED:
            NRF_LOG_INFO("Disconnected");
            bsp_board_led_off(CONNECTED_LED);
            m_conn_handle = BLE_CONN_HANDLE_INVALID;
            err_code = app_button_disable();
            APP_ERROR_CHECK(err_code);
            advertising_start();
            break;

        case BLE_GAP_EVT_SEC_PARAMS_REQUEST:
            // Pairing not supported
            err_code = sd_ble_gap_sec_params_reply(m_conn_handle,
                                                   BLE_GAP_SEC_STATUS_PAIRING_NOT_SUPP,
                                                   NULL,
                                                   NULL);
            APP_ERROR_CHECK(err_code);
            break;

        case BLE_GAP_EVT_PHY_UPDATE_REQUEST:
        {
            NRF_LOG_DEBUG("PHY update request.");
            ble_gap_phys_t const phys =
            {
                .rx_phys = BLE_GAP_PHY_AUTO,
                .tx_phys = BLE_GAP_PHY_AUTO,
            };
            err_code = sd_ble_gap_phy_update(p_ble_evt->evt.gap_evt.conn_handle, &phys);
            APP_ERROR_CHECK(err_code);
        } break;

        case BLE_GATTS_EVT_SYS_ATTR_MISSING:
            // No system attributes have been stored.
            err_code = sd_ble_gatts_sys_attr_set(m_conn_handle, NULL, 0, 0);
            APP_ERROR_CHECK(err_code);
            break;

        case BLE_GATTC_EVT_TIMEOUT:
            // Disconnect on GATT Client timeout event.
            NRF_LOG_DEBUG("GATT Client Timeout.");
            err_code = sd_ble_gap_disconnect(p_ble_evt->evt.gattc_evt.conn_handle,
                                             BLE_HCI_REMOTE_USER_TERMINATED_CONNECTION);
            APP_ERROR_CHECK(err_code);
            break;

        case BLE_GATTS_EVT_TIMEOUT:
            // Disconnect on GATT Server timeout event.
            NRF_LOG_DEBUG("GATT Server Timeout.");
            err_code = sd_ble_gap_disconnect(p_ble_evt->evt.gatts_evt.conn_handle,
                                             BLE_HCI_REMOTE_USER_TERMINATED_CONNECTION);
            APP_ERROR_CHECK(err_code);
            break;

        default:
            // No implementation needed.
            break;
    }
}


/**@brief Function for initializing the BLE stack.
 *
 * @details Initializes the SoftDevice and the BLE event interrupt.
 */
static void ble_stack_init(void)
{
    ret_code_t err_code;

    err_code = nrf_sdh_enable_request();
    APP_ERROR_CHECK(err_code);

    // Configure the BLE stack using the default settings.
    // Fetch the start address of the application RAM.
    uint32_t ram_start = 0;
    err_code = nrf_sdh_ble_default_cfg_set(APP_BLE_CONN_CFG_TAG, &ram_start);
    APP_ERROR_CHECK(err_code);

    // Enable BLE stack.
    err_code = nrf_sdh_ble_enable(&ram_start);
    APP_ERROR_CHECK(err_code);

    // Register a handler for BLE events.
    NRF_SDH_BLE_OBSERVER(m_ble_observer, APP_BLE_OBSERVER_PRIO, ble_evt_handler, NULL);
}


/**@brief Function for handling events from the button handler module.
 *
 * @param[in] pin_no        The pin that the event applies to.
 * @param[in] button_action The button action (press/release).
 */
static void button_event_handler(uint8_t pin_no, uint8_t button_action)
{
    ret_code_t err_code;

    switch (pin_no)
    {
        case LEDBUTTON_BUTTON:
            NRF_LOG_INFO("Send button state change.");
            err_code = ble_lbs_on_button_change(m_conn_handle, &m_lbs, button_action);
            if (err_code != NRF_SUCCESS &&
                err_code != BLE_ERROR_INVALID_CONN_HANDLE &&
                err_code != NRF_ERROR_INVALID_STATE &&
                err_code != BLE_ERROR_GATTS_SYS_ATTR_MISSING)
            {
                APP_ERROR_CHECK(err_code);
            }
            break;

        default:
            APP_ERROR_HANDLER(pin_no);
            break;
    }
}


/**@brief Function for initializing the button handler module.
 */
static void buttons_init(void)
{
    ret_code_t err_code;

    //The array must be static because a pointer to it will be saved in the button handler module.
    static app_button_cfg_t buttons[] =
    {
        {LEDBUTTON_BUTTON, false, BUTTON_PULL, button_event_handler}
    };

    err_code = app_button_init(buttons, ARRAY_SIZE(buttons),
                               BUTTON_DETECTION_DELAY);
    APP_ERROR_CHECK(err_code);
}


static void log_init(void)
{
    ret_code_t err_code = NRF_LOG_INIT(NULL);
    APP_ERROR_CHECK(err_code);

    NRF_LOG_DEFAULT_BACKENDS_INIT();
}


/**@brief Function for initializing power management.
 */
static void power_management_init(void)
{
    ret_code_t err_code;
    err_code = nrf_pwr_mgmt_init();
    APP_ERROR_CHECK(err_code);
}


/**@brief Function for handling the idle state (main loop).
 *
 * @details If there is no pending log operation, then sleep until next the next event occurs.
 */
static void idle_state_handle(void)
{
    if (NRF_LOG_PROCESS() == false)
    {
        nrf_pwr_mgmt_run();
    }
}


/**@brief Function for application main entry.
 */
int main(void)
{
    // Initialize.
    log_init();
    leds_init();
    timers_init();
    buttons_init();
    power_management_init();
    //apdobaj added following line to prevent assert in nrf_drv_power_on_sd_enable
    nrf_drv_power_init();
    ble_stack_init();
    gap_params_init();
    gatt_init();
    services_init();
    advertising_init();
    conn_params_init();

    //apdobaj add CLI init stuff
    #if USE_CLI

    ret_code_t ret;

    if (USE_CYCCNT_TIMESTAMP_FOR_LOG)
    {
        CoreDebug->DEMCR |= CoreDebug_DEMCR_TRCENA_Msk;
        DWT->CTRL |= DWT_CTRL_CYCCNTENA_Msk;
        DWT->CYCCNT = 0;
        APP_ERROR_CHECK(NRF_LOG_INIT(cyccnt_get, 64000000));
    }
    else
    {
        APP_ERROR_CHECK(NRF_LOG_INIT(app_timer_cnt_get));
    }

    //apdobaj commented next two lines error code returns module already initialized
    //ret = nrf_drv_clock_init();
    //APP_ERROR_CHECK(ret);
    nrf_drv_clock_lfclk_request(NULL);

    ret = app_timer_create(&m_timer_0, APP_TIMER_MODE_REPEATED, timer_handle);
    APP_ERROR_CHECK(ret);

    ret = app_timer_start(m_timer_0, APP_TIMER_TICKS(1000), NULL);
    APP_ERROR_CHECK(ret);

    cli_init();

    usbd_init();

    ret = fds_init();
    APP_ERROR_CHECK(ret);


    UNUSED_RETURN_VALUE(nrf_log_config_load());

    cli_start();

    flashlog_init();

    stack_guard_init();

    NRF_LOG_RAW_INFO("Command Line Interface example started.\n");
    NRF_LOG_RAW_INFO("Please press the Tab key to see all available commands.\n");
    //end cli init stuff
    #endif

    // Start execution.
    NRF_LOG_INFO("AST RHDM started.");
    advertising_start();

    // Enter main loop.
    //apdobaj CLI main loop
#if USE_CLI
    while (true)
    {
    //apdobaj comment follwoing line
        //UNUSED_RETURN_VALUE(NRF_LOG_PROCESS());
#if CLI_OVER_USB_CDC_ACM && APP_USBD_CONFIG_EVENT_QUEUE_ENABLE
        while (app_usbd_event_queue_process())
        {
            /* Nothing to do */
        }
#endif
        cli_process();
    }
    //apdobaj end CLI main loop
#else
    for (;;)
    {
        idle_state_handle();
    }
#endif
}


/**
 * @}
 */

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