I have downloaded V2.0.0 and it isn't available in this version but I'm not sure about other versions.
I have fixed this issue, just making you guys aware of it.
Upon installation of the SDK, in the following location:
C:\ncs\v2.0.0\modules\hal
copy the atmel repo
https://github.com/zephyrproject-rtos/hal_atmel
into a folder called atmel.
Then go to
C:\ncs\v2.0.0\nrf\west.yml
and under the name allow list of zephyr, add:
-hal_atmel
This is required to run atmel modules on nrf connect.