Does fds_gc () affect nrf_drv_timer?

Thank you for viewing my question.

I am manually doing PWM control of LEDs in nrf_drv_timer.
For example, timer is a period every 100 ms, of which 2-ms is HIGH and 80 ms is LOW.
So far, so good.
However, if I do fds_gc () within the Timer period, the LED will become unstable for a short time, and then there will be no problem.
(1) Does fds_gc affect timer?
(2) Is there a way to control PWM during fds_gc?

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